MRF

Input data: The MRF requires three input files.

---

1. Query genome sequence in .fasta/.fa/.fna format
2. Reference genome sequence in .fasta/.fa/.fna format
3. The annotation file (GFF3) of the reference genome as obtained from Genbank

---

Output: The following outputs are generated by MRF.

---

1. MirCos plot depicting missing coding regions of the query genome with respect to the reference.
2. Missing genomic regions table containing the coordinates (base positions) of the genomic regions missing in query genome as compared to reference genome
3. Missing coding sequence tables containing the completely deleted and partially deleted coding sequences in query genome as compared to reference genome are printed as separate tables..